The LabelHash Server

1ggmA motif

Motif residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361

Table of Top 100 matches

Click here for a compact table with the top 100 matches.
The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.

Downloads

Top 20 matches

For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.

1.  1b76B [pdb]

LRMSD: 0.225
p-value: 1.68e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
Biological process: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation
Cellular Component: cytoplasm
Molecular function: nucleotide binding, aminoacyl-tRNA ligase activity, glycine-tRNA ligase activity, ATP binding, ligase activity, protein dimerization activity


2.  1atiB [pdb]

LRMSD: 0.385
p-value: 5.41e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
Biological process: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation
Cellular Component: cytoplasm
Molecular function: nucleotide binding, aminoacyl-tRNA ligase activity, glycine-tRNA ligase activity, ATP binding, ligase activity, protein dimerization activity



4.  3d6jA [pdb]

LRMSD: 0.865
p-value: 0.000124
Matching residues: THR23 LEU50 GLU72 SER74 GLU76 ALA77
EC class: 0.0.0.0
Biological process: metabolic process
Molecular function: catalytic activity, phosphoglycolate phosphatase activity, hydrolase activity


5.  2p62B [pdb]

LRMSD: 0.891
p-value: 0.000143
Matching residues: THR12 GLU14 SER15 LEU20 GLU153 SER205
EC class: 0.0.0.0


6.  3iaeB [pdb]

LRMSD: 1.02
p-value: 0.000251
Matching residues: LEU211 GLU214 SER216 THR218 ALA219 GLU327
EC class: 0.0.0.0
Molecular function: magnesium ion binding, catalytic activity, lyase activity, thiamine pyrophosphate binding



8.  2oy0B [pdb]

LRMSD: 1.05
p-value: 0.000292
Matching residues: GLU10 SER153 GLU155 GLU157 GLU158 LEU184
EC class: 3.4.21.91, 2.7.7.48
Biological process: transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle, viral genome replication, evasion by virus of host immune response, methylation, interspecies interaction between organisms, transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle
Cellular Component: membrane, integral to membrane, virion, viral nucleocapsid, viral capsid, viral envelope, host cell membrane, virion part, membrane, integral to membrane, virion, viral capsid, viral envelope, host cell membrane, virion part
Molecular function: nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, mRNA (guanine-N7-)-methyltransferase activity, mRNA (nucleoside-2'-O-)-methyltransferase activity, structural molecule activity, ATP binding, methyltransferase activity, transferase activity, nucleotidyltransferase activity, hydrolase activity, nucleoside-triphosphatase activity, nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, structural molecule activity, ATP binding, methyltransferase activity, hydrolase activity


9.  2ovwD [pdb]

LRMSD: 1.05
p-value: 0.000304
Matching residues: THR15 LEU122 GLU126 SER128 GLU393 THR397
EC class: 3.2.1.4
Biological process: polysaccharide catabolic process, carbohydrate metabolic process, metabolic process, cellulose catabolic process
Molecular function: hydrolase activity, hydrolyzing O-glycosyl compounds, cellulase activity, hydrolase activity



11.  2zwiB [pdb]

LRMSD: 1.09
p-value: 0.000376
Matching residues: ARG161 GLU164 GLU166 GLU168 GLU193 SER222
EC class: 0.0.0.0
Molecular function: transferase activity, transferase activity



13.  1ipkB [pdb]

LRMSD: 1.16
p-value: 0.000621
Matching residues: THR160 SER164 GLU165 GLU167 GLU168 LEU173
EC class: 0.0.0.0
Cellular Component: vacuole, aleurone grain
Molecular function: nutrient reservoir activity


14.  3eucA [pdb]

LRMSD: 1.16
p-value: 0.000621
Matching residues: GLU284 SER348 THR349 GLU351 GLU352 LEU357
EC class: 2.6.1.9
Biological process: histidine biosynthetic process, cellular amino acid biosynthetic process, biosynthetic process
Molecular function: catalytic activity, histidinol-phosphate transaminase activity, transaminase activity, transferase activity, transferase activity, transferring nitrogenous groups


15.  3dc8B [pdb]

LRMSD: 1.17
p-value: 0.000651
Matching residues: GLU73 ARG77 SER110 THR111 GLU444 GLU448
EC class: 0.0.0.0
Molecular function: hydrolase activity, hydrolase activity




18.  3p40A [pdb]

LRMSD: 1.17
p-value: 0.000651
Matching residues: SER254 GLU267 GLU313 THR328 SER330 ARG332
Biological process: cell adhesion, axon guidance, peripheral nervous system development, myelination, synapse organization
Cellular Component: plasma membrane, membrane, integral to membrane, axon, node of Ranvier
Molecular function: protein binding



20.  3gufB [pdb]

LRMSD: 1.18
p-value: 0.000717
Matching residues: SER86 GLU87 SER89 THR90 GLU93 ARG100
Biological process: response to stress