The LabelHash Server
1kpgA motif
Motif residues: ASP17 GLY72 GLY74 TRP75 GLY76 PHE200
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1kpgB [pdb]
LRMSD: 0.08321839571p-value: 6.55933763483e-05
Matching residues: ASP17 GLY72 GLY74 TRP75 GLY76 PHE200
EC class: 2.1.1.79
GO terms:
Molecular function: transferase activity, methyltransferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity, transferase activity, methyltransferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity
Biological process: lipid biosynthetic process, lipid biosynthetic process
Cellular component: cytoplasm, cytoplasm
2. 1tpyA [pdb]
LRMSD: 0.0949709042907p-value: 7.27558144717e-05
Matching residues: ASP17 GLY72 GLY74 TRP75 GLY76 PHE200
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity, methyltransferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity
Biological process: lipid biosynthetic process
3. 1kpiA [pdb]
LRMSD: 0.205384001136p-value: 0.000127916820929
Matching residues: ASP25 GLY80 GLY82 TRP83 GLY84 PHE215
EC class: 2.1.1.79
GO terms:
Molecular function: transferase activity, methyltransferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity
Biological process: lipid biosynthetic process
Cellular component: cytoplasm
4. 1l1eB [pdb]
LRMSD: 1.06622815132p-value: 0.000219925961574
Matching residues: ASP17 GLY72 GLY74 TRP75 GLY76 PHE200
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity
Biological process: lipid biosynthetic process
5. 2fk7A [pdb]
LRMSD: 1.35196113586p-value: 0.000411574437749
Matching residues: ASP29 GLY81 GLY83 TRP84 GLY85 PHE209
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity, methyltransferase activity, cyclopropane-fatty-acyl-phospholipid synthase activity
Biological process: lipid biosynthetic process
6. 3f06A [pdb]
LRMSD: 1.37855672836p-value: 0.000460640323581
Matching residues: GLY139 TRP141 ASP183 PHE207 GLY265 GLY303
EC class: 3.5.1.98
GO terms:
Molecular function: transcription factor binding, histone deacetylase activity, hydrolase activity
Biological process: chromatin modification, regulation of transcription, DNA-dependent, transcription, chromatin assembly or disassembly, negative regulation of transcription from RNA polymerase II promoter, histone deacetylation, regulation of transcription
Cellular component: nucleus, histone deacetylase complex, cytoplasm, nuclear chromosome
7. 2hhgA [pdb]
LRMSD: 1.37989592552p-value: 0.000460658688098
Matching residues: ASP27 PHE88 GLY95 GLY119 GLY121 TRP123
EC class: 0.0.0.0
GO terms:
8. 2id3A [pdb]
LRMSD: 1.41755199432p-value: 0.000533164071385
Matching residues: TRP59 GLY60 GLY63 GLY64 ASP72 PHE130
EC class: 0.0.0.0
GO terms:
Molecular function: DNA binding, transcription regulator activity, transcription factor activity
Biological process: regulation of transcription, DNA-dependent, transcription, regulation of transcription
9. 2rdyA [pdb]
LRMSD: 1.42988228798p-value: 0.000549435033463
Matching residues: ASP621 TRP626 GLY629 PHE638 GLY682 GLY689
EC class: 0.0.0.0
GO terms:
Molecular function: catalytic activity
10. 1n6fF [pdb]
LRMSD: 1.44893729687p-value: 0.00060198031133
Matching residues: GLY208 ASP966 TRP988 GLY989 PHE1011 GLY1021
EC class: GO terms:
Molecular function: hydrolase activity, serine-type peptidase activity, peptidase activity, protein binding
Biological process: proteolysis
Cellular component: cytoplasm
11. 2yxvB [pdb]
LRMSD: 1.47772204876p-value: 0.000679754943121
Matching residues: TRP67 GLY68 GLY155 ASP197 PHE210 GLY218
EC class: 0.0.0.0
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, copper ion binding
Biological process: oxidation reduction
Cellular component: periplasmic space
12. 2fqgA [pdb]
LRMSD: 1.51626515388p-value: 0.000795744359493
Matching residues: TRP67 GLY68 GLY155 ASP197 PHE210 GLY218
EC class: 0.0.0.0
GO terms:
Molecular function: metal ion binding, oxidoreductase activity, copper ion binding
Biological process: oxidation reduction
Cellular component: periplasmic space
13. 3bgtA [pdb]
LRMSD: 1.52806270123p-value: 0.000821525871288
Matching residues: PHE27 GLY107 GLY108 TRP112 GLY113 ASP235
EC class: 4.1.1.4
GO terms:
Molecular function: carboxy-lyase activity, lyase activity, acetoacetate decarboxylase activity
14. 1xqeA [pdb]
LRMSD: 1.53898775578p-value: 0.000875041703694
Matching residues: PHE31 GLY244 TRP245 GLY264 GLY268 ASP313
EC class: 0.0.0.0
GO terms:
Molecular function: ammonia transporter activity, ammonium transmembrane transporter activity
Biological process: carbon dioxide transport, ammonium transport, transport
Cellular component: plasma membrane, integral to membrane, membrane
15. 2o1oA [pdb]
LRMSD: 1.58294987679p-value: 0.0010670813499
Matching residues: GLY76 ASP95 GLY101 TRP102 PHE161 GLY223
EC class: 0.0.0.0
GO terms:
Molecular function: transferase activity
Biological process: isoprenoid biosynthetic process
16. 1kb0A [pdb]
LRMSD: 1.62495088577p-value: 0.00126552546863
Matching residues: GLY68 PHE456 ASP497 TRP541 GLY542 GLY546
EC class: GO terms:
Molecular function: metal ion binding, oxidoreductase activity, calcium ion binding, iron ion binding, heme binding, oxidoreductase activity, acting on CH-OH group of donors, electron carrier activity
Biological process: oxidation reduction
Cellular component: periplasmic space, outer membrane-bounded periplasmic space, membrane
17. 1t3tA [pdb]
LRMSD: 1.64657819271p-value: 0.00140795146581
Matching residues: TRP305 GLY369 GLY372 GLY373 ASP473 PHE1094
EC class: 6.3.5.3
GO terms:
Molecular function: ligase activity, ATP binding, phosphoribosylformylglycinamidine synthase activity, catalytic activity, nucleotide binding
Biological process: purine nucleotide biosynthetic process, 'de novo' IMP biosynthetic process, glutamine metabolic process
Cellular component: cytoplasm
18. 1rwiB [pdb]
LRMSD: 1.65913522243p-value: 0.00151059986092
Matching residues: GLY112 PHE146 GLY154 ASP169 TRP195 GLY196
EC class: 2.7.11.1
GO terms:
Molecular function: transferase activity, kinase activity, ATP binding, protein serine/threonine kinase activity, nucleotide binding, protein kinase activity
Biological process: protein amino acid phosphorylation
19. 2fheB [pdb]
LRMSD: 1.6680893898p-value: 0.00156578118913
Matching residues: GLY11 ASP35 PHE41 GLY204 TRP205 GLY211
EC class: 2.5.1.18
GO terms:
Molecular function: transferase activity, glutathione transferase activity
Biological process: metabolic process
20. 1kkcX [pdb]
LRMSD: 1.67085087299p-value: 0.0015659405617
Matching residues: PHE125 GLY135 GLY140 TRP141 GLY142 ASP154
EC class: 1.15.1.1
GO terms:
Molecular function: metal ion binding, manganese ion binding, oxidoreductase activity, superoxide dismutase activity
Biological process: oxidation reduction, superoxide metabolic process
Cellular component: mitochondrial matrix, mitochondrion
