The LabelHash Server
1lbfA motif
Motif residues: GLU51 SER56 PRO57 PHE89 GLY91 PHE112 GLU159 ASN180 SER211 GLY233
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1a53A [pdb]
LRMSD: 0.11p-value: 2.59e-05
Matching residues: GLU51 SER56 PRO57 PHE89 GLY91 PHE112 GLU159 ASN180 SER211 GLY233
EC class: 4.1.1.48
Biological process: tryptophan biosynthetic process, tryptophan metabolic process, metabolic process, cellular amino acid biosynthetic process, aromatic amino acid family biosynthetic process
Molecular function: catalytic activity, indole-3-glycerol-phosphate synthase activity, lyase activity, carboxy-lyase activity
2. 1vc4B [pdb]
LRMSD: 0.246p-value: 7.21e-05
Matching residues: GLU51 SER56 PRO57 PHE91 GLY93 PHE114 GLU160 ASN181 SER215 GLY236
EC class: 0.0.0.0
Biological process: tryptophan biosynthetic process, metabolic process, cellular amino acid biosynthetic process, aromatic amino acid family biosynthetic process
Molecular function: catalytic activity, indole-3-glycerol-phosphate synthase activity, lyase activity
3. 1jcmP [pdb]
LRMSD: 0.297p-value: 9.11e-05
Matching residues: GLU53 SER58 PRO59 PHE93 GLY95 PHE116 GLU163 ASN184 SER215 GLY236
EC class: 4.1.1.48, 5.3.1.24
Biological process: tryptophan biosynthetic process, tryptophan metabolic process, metabolic process, cellular amino acid biosynthetic process, aromatic amino acid family biosynthetic process
Molecular function: catalytic activity, indole-3-glycerol-phosphate synthase activity, phosphoribosylanthranilate isomerase activity, lyase activity, carboxy-lyase activity, isomerase activity
4. 1i4nA [pdb]
LRMSD: 0.544p-value: 0.000165
Matching residues: GLU47 SER52 PRO53 PHE87 GLY89 PHE110 GLU157 ASN179 SER210 GLY231
EC class: 4.1.1.48
Biological process: tryptophan biosynthetic process, tryptophan metabolic process, metabolic process, cellular amino acid biosynthetic process, aromatic amino acid family biosynthetic process
Molecular function: catalytic activity, indole-3-glycerol-phosphate synthase activity, lyase activity, carboxy-lyase activity
5. 1j5tA [pdb]
LRMSD: 0.579p-value: 0.000177
Matching residues: GLU25 SER30 PRO31 PHE65 GLY67 PHE88 GLU135 ASN157 SER188 GLY209
EC class: 4.1.1.48
Biological process: tryptophan biosynthetic process, tryptophan metabolic process, metabolic process, cellular amino acid biosynthetic process, aromatic amino acid family biosynthetic process
Molecular function: catalytic activity, indole-3-glycerol-phosphate synthase activity, lyase activity, carboxy-lyase activity
6. 2gqfA [pdb]
LRMSD: 2.62p-value: 0.000247
Matching residues: SER195 PHE234 GLY238 SER240 PRO242 ASN249 GLU255 PHE330 GLU336 GLY337
EC class: 0.0.0.0
7. 1uc4A [pdb]
LRMSD: 2.77p-value: 0.000344
Matching residues: PRO138 SER139 GLY161 PHE166 GLU170 SER333 ASN334 GLY363 GLU379 PHE384
EC class: 0.0.0.0
Biological process: metabolic process
Molecular function: catalytic activity, lyase activity, hydro-lyase activity, cobalamin binding, propanediol dehydratase activity, lyase activity, propanediol dehydratase activity, lyase activity, propanediol dehydratase activity
8. 2vtzB [pdb]
LRMSD: 2.79p-value: 0.000369
Matching residues: GLY20 PHE22 PRO26 SER118 GLU198 PHE202 GLU217 GLY347 SER353 ASN359
EC class: 2.3.1.9
Biological process: metabolic process, poly-hydroxybutyrate biosynthetic process
Cellular Component: cytoplasm
Molecular function: catalytic activity, acetyl-CoA C-acetyltransferase activity, acyltransferase activity, transferase activity, transferase activity
9. 3h0lV [pdb]
LRMSD: 2.84p-value: 0.000448
Matching residues: ASN74 GLU90 GLY123 SER125 PHE132 PRO144 SER147 GLU347 PHE404 GLY405
EC class: 0.0.0.0
Biological process: translation, translation, translation, regulation of translational fidelity
Molecular function: nucleotide binding, ATP binding, ligase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, nucleotide binding, ATP binding, ligase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, nucleotide binding
10. 3nqhA [pdb]
LRMSD: 2.86p-value: 0.000488
Matching residues: PHE222 GLU229 GLY249 PHE251 GLU254 GLY255 SER256 ASN260 PRO299 SER308
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process
Molecular function: hydrolase activity, hydrolyzing O-glycosyl compounds
11. 2qm0B [pdb]
LRMSD: 2.87p-value: 0.000503
Matching residues: PHE178 SER180 PRO182 GLY216 SER217 ASN228 GLU232 PHE244 GLU248 GLY265
EC class: 0.0.0.0
12. 1jfrB [pdb]
LRMSD: 2.89p-value: 0.000551
Matching residues: GLU6 GLY8 ASN13 SER15 GLY55 PRO75 SER79 PHE82 PHE230 GLU238
EC class: 0.0.0.0
Molecular function: hydrolase activity
13. 3nssA [pdb]
LRMSD: 2.9p-value: 0.000568
Matching residues: ASN104 SER105 GLU119 GLU165 GLY351 PHE374 SER404 GLY441 PHE446 PRO459
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process, metabolic process
Cellular Component: membrane, integral to membrane, virion, host cell plasma membrane, host cell membrane
Molecular function: exo-alpha-sialidase activity, hydrolase activity, hydrolase activity
14. 3b7eA [pdb]
LRMSD: 2.91p-value: 0.000585
Matching residues: ASN104 GLU119 GLU165 GLY363 PHE374 SER404 GLY441 SER442 PHE446 PRO459
EC class: 3.2.1.18
Biological process: carbohydrate metabolic process, metabolic process
Cellular Component: membrane, integral to membrane, virion, host cell plasma membrane, host cell membrane, virion membrane
Molecular function: exo-alpha-sialidase activity, hydrolase activity, hydrolase activity, acting on glycosyl bonds
15. 3fkjB [pdb]
LRMSD: 2.93p-value: 0.00064
Matching residues: SER2 ASN7 PHE42 PRO132 GLU146 GLU159 GLY165 SER168 GLY290 PHE293
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process
Molecular function: sugar binding, isomerase activity
16. 2ivfA [pdb]
LRMSD: 2.95p-value: 0.000699
Matching residues: SER91 GLY196 SER197 ASN487 GLU660 PRO664 PHE670 GLU742 PHE753 GLY766
EC class: 0.0.0.0
Biological process: oxidation-reduction process, oxidation-reduction process
Cellular Component: periplasmic space
Molecular function: heme binding, binding, oxidoreductase activity, molybdenum ion binding, metal ion binding
17. 3kfuH [pdb]
LRMSD: 2.97p-value: 0.000764
Matching residues: ASN68 GLU84 GLY117 SER119 PHE126 PRO138 SER141 GLU337 PHE394 GLY395
Biological process: translation, tRNA aminoacylation for protein translation, aspartyl-tRNA aminoacylation, translation, translation, translation, regulation of translational fidelity
Cellular Component: cytoplasm
Molecular function: nucleotide binding, nucleic acid binding, aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, ATP binding, nucleotide binding, ATP binding, ligase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, nucleotide binding, ATP binding, ligase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, nucleotide binding
18. 1e04I [pdb]
LRMSD: 2.98p-value: 0.000787
Matching residues: SER79 PRO80 SER191 ASN192 GLU195 PHE221 GLU326 GLY328 PHE422 GLY424
Biological process: response to nutrient, blood coagulation, negative regulation of inflammatory response
Cellular Component: extracellular region, extracellular space, plasma membrane
Molecular function: protease binding, serine-type endopeptidase inhibitor activity, protein binding, heparin binding, peptidase inhibitor activity
19. 2as0B [pdb]
LRMSD: 2.99p-value: 0.000811
Matching residues: PRO35 GLY52 PHE53 GLU105 GLY111 SER127 PHE133 GLU153 ASN155 SER159
EC class: 0.0.0.0
Molecular function: RNA binding
20. 2xa7M [pdb]
LRMSD: 2.99p-value: 0.000834
Matching residues: SER180 ASN182 PHE298 PHE322 GLY371 GLU402 PRO407 SER408 GLY437 GLU443
EC class: 0.0.0.0
Biological process: transport, intracellular protein transport, protein transport, vesicle-mediated transport, transport, intracellular protein transport, protein transport, vesicle-mediated transport, regulation of defense response to virus by virus, transport, intracellular protein transport, protein transport, vesicle-mediated transport, intracellular protein transport, protein transport, vesicle-mediated transport
Cellular Component: plasma membrane, coated pit, membrane, membrane coat, AP-2 adaptor complex, cytosol, plasma membrane, coated pit, membrane, membrane coat, clathrin adaptor complex, endocytic vesicle membrane, mitochondrion, plasma membrane, coated pit, membrane, clathrin vesicle coat, clathrin adaptor complex, clathrin coat of coated pit, transport vesicle, membrane, membrane coat, clathrin adaptor complex
Molecular function: protein binding, protein transporter activity, binding, protein binding, protein transporter activity, clathrin binding, protein binding, lipid binding, binding, protein binding, protein transporter activity
