The LabelHash Server
7mhtA motif
Motif residues: PRO80 CYS81 SER85 GLU119 ARG163 ARG165
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 2i9kA [pdb]
LRMSD: 0.326p-value: 2.8e-05
Matching residues: PRO80 CYS81 SER85 GLU119 ARG163 ARG165
EC class: 2.1.1.37
Biological process: DNA methylation, DNA restriction-modification system
Molecular function: DNA binding, DNA (cytosine-5-)-methyltransferase activity, methyltransferase activity, transferase activity
2. 1dctA [pdb]
LRMSD: 0.461p-value: 7.3e-05
Matching residues: PRO70 CYS71 SER75 GLU109 ARG153 ARG155
EC class: 2.1.1.37
Biological process: DNA methylation, DNA restriction-modification system
Molecular function: DNA binding, DNA (cytosine-5-)-methyltransferase activity, methyltransferase activity, transferase activity
3. 2qrvE [pdb]
LRMSD: 0.604p-value: 0.000121
Matching residues: PRO705 CYS706 SER710 GLU752 ARG786 ARG788
Biological process: negative regulation of transcription from RNA polymerase II promoter, DNA methylation, methylation-dependent chromatin silencing, regulation of gene expression by genetic imprinting, spermatogenesis, DNA methylation on cytosine within a CG sequence, chromatin modification, DNA methylation involved in embryo development, DNA methylation involved in gamete generation, S-adenosylhomocysteine metabolic process, S-adenosylmethioninamine metabolic process, in utero embryonic development, DNA methylation, regulation of gene expression by genetic imprinting, spermatogenesis
Cellular Component: chromosome, centromeric region, euchromatin, heterochromatin, nucleus, nuclear heterochromatin, cytoplasm, nuclear matrix, condensed nuclear chromosome, nucleus, nuclear heterochromatin, cytoplasm
Molecular function: DNA binding, chromatin binding, DNA (cytosine-5-)-methyltransferase activity, protein binding, methyltransferase activity, zinc ion binding, transferase activity, unmethylated CpG binding, metal ion binding, DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates, protein binding, enzyme activator activity, zinc ion binding, transcription repressor activity, enzyme binding
4. 2napA [pdb]
LRMSD: 1.1p-value: 0.000176
Matching residues: ARG540 ARG542 LEU549 PRO552 CYS553 SER555
EC class: 1.7.99.4
Biological process: transport, electron transport chain, nitrate assimilation, oxidation-reduction process
Cellular Component: periplasmic space
Molecular function: binding, nitrate reductase activity, oxidoreductase activity, molybdenum ion binding, metal ion binding, iron-sulfur cluster binding, 4 iron
5. 1zejA [pdb]
LRMSD: 1.33p-value: 0.000267
Matching residues: ARG81 GLU84 PRO90 CYS92 SER93 ARG106
EC class: 0.0.0.0
Biological process: fatty acid metabolic process, metabolic process
Molecular function: catalytic activity, binding, oxidoreductase activity, coenzyme binding
6. 1j74A [pdb]
LRMSD: 1.41p-value: 0.000372
Matching residues: ARG11 ARG14 THR44 CYS69 GLU75 PRO78
EC class: 0.0.0.0
Biological process: protein polyubiquitination, DNA double-strand break processing, regulation of DNA repair, cell proliferation, protein ubiquitination, post-translational protein modification, regulation of protein metabolic process
Cellular Component: nucleus, cytoplasm, UBC13-MMS2 complex
Molecular function: protein binding, small conjugating protein ligase activity
7. 2gjxA [pdb]
LRMSD: 1.43p-value: 0.000441
Matching residues: SER59 PRO102 CYS104 LEU107 ARG247 ARG249
EC class: 3.2.1.52
Biological process: carbohydrate metabolic process, metabolic process, skeletal system development, carbohydrate metabolic process, N-acetylglucosamine metabolic process, glycosphingolipid metabolic process, ganglioside catabolic process, cellular calcium ion homeostasis, lysosome organization, single fertilization, penetration of zona pellucida, sensory perception of sound, locomotory behavior, male courtship behavior, metabolic process, phospholipid biosynthetic process, oligosaccharide catabolic process, lipid storage, sexual reproduction, glycosaminoglycan metabolic process, regulation of cellular metabolic process, myelination, cellular protein metabolic process, oogenesis, neuromuscular process controlling balance, neuromuscular process
Cellular Component: lysosome, acrosomal vesicle, soluble fraction, lysosome, membrane
Molecular function: catalytic activity, hydrolase activity, hydrolyzing O-glycosyl compounds, beta-N-acetylhexosaminidase activity, protein binding, hydrolase activity, hydrolase activity, acting on glycosyl bonds, cation binding, protein heterodimerization activity, catalytic activity, hydrolase activity, hydrolyzing O-glycosyl compounds, beta-N-acetylhexosaminidase activity, sugar binding, hexosaminidase activity, beta-N-acetylglucosaminidase activity, hydrolase activity, hydrolase activity
8. 2nxoD [pdb]
LRMSD: 1.47p-value: 0.000553
Matching residues: GLU41 ARG109 ARG113 THR131 CYS132 PRO133
EC class: 0.0.0.0
9. 2a4dA [pdb]
LRMSD: 1.48p-value: 0.000553
Matching residues: ARG87 ARG90 THR120 CYS145 GLU151 PRO154
Biological process: protein polyubiquitination, regulation of DNA repair, regulation of transcription, DNA-dependent, cell differentiation, positive regulation of I-kappaB kinase/NF-kappaB cascade, post-translational protein modification, positive regulation of NF-kappaB transcription factor activity
Cellular Component: nucleus, cytoplasm, cytosol, ubiquitin conjugating enzyme complex
Molecular function: protein binding, transcription activator activity, small conjugating protein ligase activity
10. 2hlwA [pdb]
LRMSD: 1.48p-value: 0.000579
Matching residues: ARG36 ARG39 THR69 CYS94 GLU100 PRO103
Biological process: protein polyubiquitination, regulation of DNA repair, regulation of transcription, DNA-dependent, cell differentiation, positive regulation of I-kappaB kinase/NF-kappaB cascade, post-translational protein modification, positive regulation of NF-kappaB transcription factor activity
Cellular Component: nucleus, cytoplasm, cytosol, ubiquitin conjugating enzyme complex
Molecular function: protein binding, transcription activator activity, small conjugating protein ligase activity
11. 3ifrB [pdb]
LRMSD: 1.5p-value: 0.000637
Matching residues: CYS343 PRO345 THR364 ARG372 ARG377 LEU380
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process
Molecular function: xylulokinase activity, kinase activity, transferase activity, phosphotransferase activity
12. 1fp3B [pdb]
LRMSD: 1.51p-value: 0.000738
Matching residues: SER317 ARG348 ARG351 GLU357 PRO384 CYS386
EC class: 5.1.3.8
Biological process: mannose metabolic process, N-acetylglucosamine metabolic process
Molecular function: catalytic activity, mannose-6-phosphate isomerase activity, isomerase activity, N-acylglucosamine 2-epimerase activity
13. 2pmzY [pdb]
LRMSD: 1.54p-value: 0.000892
Matching residues: PRO4 CYS7 THR9 ARG42 ARG46 LEU49
EC class: 2.7.7.6
Biological process: transcription, DNA-dependent, transcription, DNA-dependent
Cellular Component: RNA polymerase complex
Molecular function: DNA binding, DNA-directed RNA polymerase activity, zinc ion binding, transferase activity, nucleotidyltransferase activity, metal ion binding, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, protein dimerization activity, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, nucleotide binding, catalytic activity, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, DNA binding, RNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, DNA binding, DNA-directed RNA polymerase activity, zinc ion binding, transferase activity, nucleotidyltransferase activity, ribonucleoside binding, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, protein dimerization activity, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, DNA binding, DNA-directed RNA polymerase activity, zinc ion binding, transferase activity, nucleotidyltransferase activity, metal ion binding, DNA binding, DNA-directed RNA polymerase activity, transferase activity, nucleotidyltransferase activity, metal ion binding
14. 2v65A [pdb]
LRMSD: 1.54p-value: 0.000892
Matching residues: ARG157 ARG159 LEU274 PRO290 CYS291 THR299
EC class: 1.1.1.27
Biological process: carbohydrate metabolic process, glycolysis, metabolic process, cellular carbohydrate metabolic process, oxidation-reduction process
Cellular Component: cytoplasm
Molecular function: catalytic activity, L-lactate dehydrogenase activity, binding, oxidoreductase activity, oxidoreductase activity
15. 3g0qA [pdb]
LRMSD: 1.54p-value: 0.000892
Matching residues: ARG149 ARG153 LEU154 SER204 CYS208 PRO209
EC class: 0.0.0.0
Biological process: DNA repair, base-excision repair, metabolic process
Cellular Component: intracellular
Molecular function: DNA binding, catalytic activity, endonuclease activity, hydrolase activity, hydrolase activity, acting on glycosyl bonds, DNA N-glycosylase activity
16. 2o7dE [pdb]
LRMSD: 1.54p-value: 0.000892
Matching residues: ARG238 ARG240 GLU242 SER301 CYS304 PRO306
EC class: 0.0.0.0
Biological process: histidine metabolic process, biosynthetic process
Molecular function: catalytic activity, histidine ammonia-lyase activity, lyase activity, ammonia-lyase activity
17. 2jndA [pdb]
LRMSD: 1.55p-value: 0.000935
Matching residues: THR69 GLU81 PRO83 CYS84 ARG101 ARG112
EC class: 0.0.0.0
Biological process: signal transduction, cell surface receptor linked signaling pathway, G-protein coupled receptor protein signaling pathway, negative regulation of angiogenesis
Cellular Component: plasma membrane, membrane, integral to membrane
Molecular function: signal transducer activity, receptor activity, transmembrane receptor activity, G-protein coupled receptor activity, hormone activity, protein binding, corticotrophin-releasing factor receptor activity
18. 1ml0D [pdb]
LRMSD: 1.56p-value: 0.00103
Matching residues: ARG29 ARG30 SER33 CYS36 PRO37 GLU39
EC class: 0.0.0.0
Biological process: response to hypoxia, positive regulation of endothelial cell proliferation, monocyte chemotaxis, protein phosphorylation, cellular calcium ion homeostasis, anti-apoptosis, chemotaxis, inflammatory response, immune response, humoral immune response, cell adhesion, signal transduction, cell surface receptor linked signaling pathway, transforming growth factor beta receptor signaling pathway, G-protein coupled receptor protein signaling pathway, G-protein signaling, coupled to cyclic nucleotide second messenger, JAK-STAT cascade, response to heat, response to mechanical stimulus, response to bacterium, organ morphogenesis, response to gamma radiation, response to activity, viral genome replication, cytokine-mediated signaling pathway, neutrophil chemotaxis, organ regeneration, response to lipopolysaccharide, response to progesterone stimulus, response to vitamin B3, response to drug, response to amino acid stimulus, response to ethanol, response to antibiotic, vascular endothelial growth factor receptor signaling pathway, macrophage chemotaxis, lymphocyte chemotaxis, positive regulation of synaptic transmission, response to glucocorticoid stimulus, maternal process involved in parturition
Cellular Component: extracellular region, extracellular space, cytoplasm, neuronal cell body
Molecular function: protein binding, G-protein-coupled receptor binding, protein kinase activity, signal transducer activity, receptor binding, cytokine activity, protein binding, chemokine activity, heparin binding, CCR2 chemokine receptor binding
19. 1ej6A [pdb]
LRMSD: 1.56p-value: 0.00103
Matching residues: PRO803 CYS806 THR808 ARG989 ARG992 LEU1001
EC class: 2.7.7.50, 2.1.1.56
Biological process: mRNA capping, mRNA processing, mRNA capping, mRNA processing
Cellular Component: intracellular, virion, viral nucleocapsid, viral capsid, virion, viral nucleocapsid, viral capsid, virion, viral nucleocapsid, viral capsid, virion, viral nucleocapsid, viral capsid
Molecular function: nucleotide binding, helicase activity, ATP binding, zinc ion binding, hydrolase activity, metal ion binding, nucleotide binding, catalytic activity, mRNA (guanine-N7-)-methyltransferase activity, mRNA guanylyltransferase activity, ATP binding, GTP binding, methyltransferase activity, transferase activity, nucleotidyltransferase activity
20. 1v6aA [pdb]
LRMSD: 1.57p-value: 0.00108
Matching residues: ARG155 ARG157 LEU276 PRO292 CYS293 THR301
EC class: 1.1.1.27
Biological process: carbohydrate metabolic process, glycolysis, metabolic process, cellular carbohydrate metabolic process, oxidation-reduction process
Cellular Component: cytoplasm
Molecular function: catalytic activity, L-lactate dehydrogenase activity, binding, oxidoreductase activity, oxidoreductase activity
