The LabelHash Server
1czfA motif
Motif residues: ASN178 ASP180 ASP201 ARG256 LYS258 TYR291
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1czfB [pdb]
LRMSD: 0.158p-value: 3.11e-05
Matching residues: ASN178 ASP180 ASP201 ARG256 LYS258 TYR291
EC class: 3.2.1.15
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Cellular Component: extracellular region
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
2. 2iq7C [pdb]
LRMSD: 0.255p-value: 6.82e-05
Matching residues: ASN176 ASP178 ASP199 ARG254 LYS256 TYR289
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
3. 1nhcF [pdb]
LRMSD: 0.274p-value: 7.74e-05
Matching residues: ASN184 ASP186 ASP207 ARG262 LYS264 TYR297
EC class: 3.2.1.15
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Cellular Component: extracellular region
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
4. 1hg8A [pdb]
LRMSD: 0.489p-value: 0.000148
Matching residues: ASN189 ASP191 ASP212 ARG267 LYS269 TYR302
EC class: 3.2.1.15
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Cellular Component: extracellular region
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
5. 1ib4A [pdb]
LRMSD: 0.606p-value: 0.000191
Matching residues: ASN157 ASP159 ASP180 ARG235 LYS237 TYR270
EC class: 3.2.1.15
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Cellular Component: extracellular region
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
6. 1kccA [pdb]
LRMSD: 0.663p-value: 0.000216
Matching residues: ASN151 ASP153 ASP173 ARG226 LYS228 TYR262
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
7. 3jurB [pdb]
LRMSD: 0.769p-value: 0.000258
Matching residues: ASN237 ASP239 ASP260 ARG327 LYS329 TYR362
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process
Molecular function: polygalacturonase activity
8. 1bheA [pdb]
LRMSD: 1.02p-value: 0.000312
Matching residues: ASN200 ASP202 ASP223 ARG280 LYS282 TYR314
EC class: 3.2.1.15
Biological process: carbohydrate metabolic process, cellular cell wall organization, metabolic process
Cellular Component: extracellular region
Molecular function: polygalacturonase activity, hydrolase activity, hydrolase activity
9. 3oyvA [pdb]
LRMSD: 1.23p-value: 0.000374
Matching residues: LYS271 TYR276 ARG302 ASP322 ASN324 ASP326
EC class: 0.0.0.0
10. 2uveB [pdb]
LRMSD: 1.23p-value: 0.000374
Matching residues: ASN379 ASP381 ASP402 ARG466 LYS468 TYR501
EC class: 0.0.0.0
11. 1xbfB [pdb]
LRMSD: 1.37p-value: 0.000438
Matching residues: TYR7 ASN13 ASP14 ASP15 HIS44 LYS126
EC class: 0.0.0.0
12. 1vmhA [pdb]
LRMSD: 1.44p-value: 0.000475
Matching residues: TYR7 ASN13 ASP14 ASP15 HIS44 LYS126
EC class: 0.0.0.0
13. 1d5rA [pdb]
LRMSD: 1.53p-value: 0.000554
Matching residues: ASN49 ASP51 ASP52 HIS61 LYS66 TYR68
EC class: 3.1.3.48, 3.1.3.16, 3.1.3.67
Biological process: regulation of cyclin-dependent protein kinase activity, angiogenesis, negative regulation of protein phosphorylation, regulation of B cell apoptosis, protein dephosphorylation, lipid metabolic process, apoptosis, induction of apoptosis, nervous system development, central nervous system development, heart development, aging, response to nutrient, memory, cell proliferation, negative regulation of cell proliferation, response to glucose stimulus, response to organic substance, response to inorganic substance, response to zinc ion, regulation of neuron projection development, response to organic cyclic compound, dephosphorylation, cell migration, negative regulation of cell migration, neuron projection development, regulation of protein stability, response to estradiol stimulus, regulation of myeloid cell apoptosis, response to ATP, response to drug, positive regulation of apoptosis, negative regulation of apoptosis, endothelial cell migration, response to ethanol, response to arsenic-containing substance, inositol phosphate dephosphorylation, phosphatidylinositol dephosphorylation, platelet-derived growth factor receptor signaling pathway, cardiac muscle tissue development, negative regulation of epithelial cell proliferation, negative regulation of phagocytosis, protein stabilization, positive regulation of sequence-specific DNA binding transcription factor activity, regulation of cell cycle, negative regulation of focal adhesion assembly, negative regulation of protein kinase B signaling cascade, canonical Wnt receptor signaling pathway, prostate gland growth
Cellular Component: nucleus, cytoplasm, mitochondrion, cytosol
Molecular function: magnesium ion binding, inositol or phosphatidylinositol phosphatase activity, phosphatidylinositol-3-phosphatase activity, phosphoprotein phosphatase activity, protein serine/threonine phosphatase activity, protein tyrosine phosphatase activity, platelet-derived growth factor receptor binding, protein binding, protein tyrosine/serine/threonine phosphatase activity, lipid binding, phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity, hydrolase activity, phosphatase activity, enzyme binding, PDZ domain binding, inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity, phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity
14. 3n5aA [pdb]
LRMSD: 1.59p-value: 0.000658
Matching residues: ARG267 ASP357 ASN364 ASP365 TYR371 LYS402
EC class: 0.0.0.0
Biological process: plasma membrane repair, transport
Cellular Component: lysosome, synaptic vesicle, membrane, integral to membrane, cell junction, synaptic vesicle membrane, cytoplasmic vesicle, synapse
Molecular function: transporter activity, metal ion binding
15. 1kaeA [pdb]
LRMSD: 1.62p-value: 0.000708
Matching residues: ASP38 ASP41 ASN42 TYR130 LYS218 ARG219
EC class: 1.1.1.23
Biological process: histidine biosynthetic process, metabolic process, cellular amino acid biosynthetic process, oxidation-reduction process
Molecular function: histidinol dehydrogenase activity, zinc ion binding, oxidoreductase activity, metal ion binding, NAD binding
16. 1ouuD [pdb]
LRMSD: 1.64p-value: 0.000769
Matching residues: TYR85 LYS86 ASP99 ASP101 ASN102 ARG144
EC class: 0.0.0.0
Biological process: transport, oxygen transport, transport, oxygen transport
Cellular Component: hemoglobin complex, hemoglobin complex
Molecular function: oxygen transporter activity, iron ion binding, oxygen binding, heme binding, metal ion binding, oxygen transporter activity, iron ion binding, oxygen binding, heme binding, metal ion binding
17. 1nikA [pdb]
LRMSD: 1.65p-value: 0.000814
Matching residues: LYS368 HIS399 ASP438 ASN439 ASP440 TYR465
EC class: 2.7.7.6
Biological process: transcription from RNA polymerase II promoter, termination of RNA polymerase II transcription, transcription from RNA polymerase II promoter, termination of RNA polymerase II transcription, transcription from RNA polymerase I promoter, transcription from RNA polymerase II promoter, transcription from RNA polymerase III promoter, transcription, DNA-dependent, transcription from RNA polymerase II promoter, transcription from RNA polymerase III promoter, tRNA transcription from RNA polymerase III promoter, transcription, DNA-dependent, transcription from RNA polymerase I promoter, transcription from RNA polymerase II promoter, transcription from RNA polymerase III promoter, DNA repair, transcription-coupled nucleotide-excision repair, transcription from RNA polymerase II promoter, transcription initiation from RNA polymerase II promoter, response to DNA damage stimulus, transcription from RNA polymerase I promoter, transcription from RNA polymerase II promoter, transcription from RNA polymerase III promoter, tRNA transcription from RNA polymerase III promoter, transcription from RNA polymerase II promoter, transcription from RNA polymerase I promoter, transcription from RNA polymerase II promoter, transcription from RNA polymerase III promoter
Cellular Component: nucleus, nucleoplasm, DNA-directed RNA polymerase II, core complex, nucleus, DNA-directed RNA polymerase II, core complex, nucleus, nucleoplasm, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase III complex, nucleolus, DNA-directed RNA polymerase I complex, nucleus, nucleoplasm, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase I complex, cytoplasm, RNA polymerase complex, nucleus, nucleoplasm, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase III complex, nucleolus, DNA-directed RNA polymerase I complex, nucleus, DNA-directed RNA polymerase II, core complex, nucleus, nucleoplasm, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase III complex, DNA-directed RNA polymerase I complex, nucleus, DNA-directed RNA polymerase II, core complex, mitochondrion
Molecular function: DNA binding, DNA-directed RNA polymerase activity, protein binding, metal ion binding, protein dimerization activity, DNA binding, DNA-directed RNA polymerase activity, protein binding, protein dimerization activity, DNA binding, DNA-directed RNA polymerase activity, metal ion binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, zinc ion binding, metal ion binding, nucleic acid binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, zinc ion binding, transcription regulator activity, metal ion binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, transferase activity, nucleotidyltransferase activity, metal ion binding, DNA-directed RNA polymerase activity, protein binding, DNA binding, DNA-directed RNA polymerase activity, protein binding, transferase activity, nucleotidyltransferase activity, ribonucleoside binding, metal ion binding
18. 1cm8A [pdb]
LRMSD: 1.67p-value: 0.000865
Matching residues: TYR135 LYS139 ARG142 ASP153 ASN158 ASP171
EC class: 2.7.11.24
Biological process: protein phosphorylation, DNA damage induced protein phosphorylation, cell cycle, cell cycle arrest, signal transduction, Ras protein signal transduction, muscle organ development, myoblast differentiation, negative regulation of cell cycle
Cellular Component: soluble fraction, cytoplasm, mitochondrion
Molecular function: nucleotide binding, magnesium ion binding, protein kinase activity, protein serine/threonine kinase activity, MAP kinase activity, protein binding, ATP binding, kinase activity, transferase activity, metal ion binding
19. 2j63B [pdb]
LRMSD: 1.7p-value: 0.000984
Matching residues: LYS169 TYR200 ARG204 ASP335 ASN337 ASP411
EC class: 0.0.0.0
Biological process: DNA repair
Cellular Component: intracellular
Molecular function: DNA binding, DNA-(apurinic or apyrimidinic site) lyase activity, nuclease activity, endonuclease activity, lyase activity
20. 3gebC [pdb]
LRMSD: 1.7p-value: 0.000984
Matching residues: ASN323 ASP324 ASP327 ARG385 LYS388 TYR391
EC class: 0.0.0.0
Biological process: DNA repair, protein dephosphorylation, apoptosis, response to DNA damage stimulus, multicellular organismal development, mesodermal cell fate specification, metabolic process, chromatin modification, histone dephosphorylation
Cellular Component: nucleus, cytoplasm
Molecular function: magnesium ion binding, catalytic activity, phosphoprotein phosphatase activity, protein tyrosine phosphatase activity, protein binding, hydrolase activity, metal ion binding
