The LabelHash Server
1ep0A motif
Motif residues: SER53 ARG61 HIS64 LYS73 ARG90 ASP172
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1epzA [pdb]
LRMSD: 0.131p-value: 2.04e-05
Matching residues: SER53 ARG61 HIS64 LYS73 ARG90 ASP172
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process, extracellular polysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity, isomerase activity
2. 1dztA [pdb]
LRMSD: 0.313p-value: 6.42e-05
Matching residues: SER52 ARG60 HIS63 LYS73 ARG90 ASP170
EC class: 5.1.3.13
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity, isomerase activity
3. 1rtvA [pdb]
LRMSD: 0.426p-value: 9.91e-05
Matching residues: SER51 ARG59 HIS62 LYS71 ARG88 ASP168
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity, isomerase activity
4. 1upiA [pdb]
LRMSD: 0.577p-value: 0.000163
Matching residues: SER51 ARG59 HIS62 LYS72 ARG89 ASP171
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process, dTDP-rhamnose biosynthetic process, growth, extracellular polysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity, isomerase activity, protein homodimerization activity
5. 1nywA [pdb]
LRMSD: 0.63p-value: 0.000202
Matching residues: SER65 ARG73 HIS76 LYS82 ARG100 ASP180
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity, isomerase activity
6. 2b9uG [pdb]
LRMSD: 0.644p-value: 0.000213
Matching residues: SER50 ARG58 HIS61 LYS71 ARG88 ASP163
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
7. 1oi6B [pdb]
LRMSD: 0.708p-value: 0.000257
Matching residues: SER52 ARG60 HIS63 LYS73 ARG90 ASP170
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
8. 2c0zA [pdb]
LRMSD: 0.746p-value: 0.000286
Matching residues: SER51 ARG59 HIS62 LYS72 ARG89 ASP168
EC class: 0.0.0.0
Biological process: lipopolysaccharide biosynthetic process
Molecular function: dTDP-4-dehydrorhamnose 3,5-epimerase activity
9. 2glfB [pdb]
LRMSD: 1.33p-value: 0.000422
Matching residues: ALA32 LYS73 HIS94 ALA256 ARG293 ASP328
EC class: 0.0.0.0
Biological process: proteolysis
Cellular Component: vacuole
Molecular function: aminopeptidase activity, peptidase activity, metallopeptidase activity, zinc ion binding, hydrolase activity, metal ion binding
10. 1md9A [pdb]
LRMSD: 1.33p-value: 0.000422
Matching residues: ARG34 ASP183 ARG202 HIS204 LYS212 THR388
EC class: 0.0.0.0
Biological process: metabolic process, siderophore biosynthetic process
Cellular Component: cytoplasm
Molecular function: nucleotide binding, catalytic activity, ATP binding, (2,3-dihydroxybenzoyl)adenylate synthase activity, ligase activity
11. 1ti8A [pdb]
LRMSD: 1.37p-value: 0.000483
Matching residues: ARG131 HIS183 LYS193 ALA219 ARG229 ASP231
EC class: 0.0.0.0
Biological process: viral envelope fusion with host membrane, viral envelope fusion with host membrane
Cellular Component: membrane, integral to membrane, virion, viral envelope, host cell plasma membrane, host cell membrane, membrane, integral to membrane, virion, viral envelope, host cell plasma membrane, host cell membrane
Molecular function: host cell surface receptor binding, host cell surface receptor binding
12. 3hjeA [pdb]
LRMSD: 1.37p-value: 0.000495
Matching residues: LYS13 ALA40 HIS46 ASP49 THR55 ARG598
EC class: 0.0.0.0
Biological process: carbohydrate metabolic process
Molecular function: catalytic activity, transferase activity, cation binding
13. 2dkcB [pdb]
LRMSD: 1.39p-value: 0.000509
Matching residues: ALA287 ASP294 LYS314 ARG364 HIS391 ALA435
EC class: 5.4.2.3
Biological process: carbohydrate metabolic process
Molecular function: magnesium ion binding, phosphoacetylglucosamine mutase activity, isomerase activity, intramolecular transferase activity, phosphotransferases
14. 2qyvB [pdb]
LRMSD: 1.4p-value: 0.000536
Matching residues: LYS28 ARG49 HIS76 THR111 ALA114 ASP169
EC class: 0.0.0.0
Biological process: proteolysis, metabolic process
Molecular function: protein binding, hydrolase activity, dipeptidase activity
15. 1hrdB [pdb]
LRMSD: 1.47p-value: 0.000728
Matching residues: ARG205 ALA219 THR227 LYS248 HIS403 ASP408
EC class: 1.4.1.2
Biological process: cellular amino acid metabolic process, metabolic process, oxidation-reduction process
Molecular function: catalytic activity, glutamate dehydrogenase activity, binding, oxidoreductase activity, oxidoreductase activity
16. 1v5wB [pdb]
LRMSD: 1.48p-value: 0.000754
Matching residues: LYS132 HIS137 ASP172 ARG192 ALA329 ALA332
EC class: 0.0.0.0
Biological process: pachytene, ovarian follicle development, oocyte maturation, DNA metabolic process, cell cycle, meiosis, reciprocal meiotic recombination, male meiosis I, gamete generation, spermatogenesis, spermatid development, female gamete generation
Cellular Component: condensed nuclear chromosome, nucleus, cytoplasm, intracellular membrane-bounded organelle
Molecular function: nucleotide binding, DNA binding, protein binding, ATP binding, DNA-dependent ATPase activity, nucleoside-triphosphatase activity
17. 3krgA [pdb]
LRMSD: 1.48p-value: 0.00078
Matching residues: ARG110 ASP161 ARG206 LYS218 HIS221 SER303
EC class: 4.2.2.2
Cellular Component: extracellular region
Molecular function: lyase activity, pectate lyase activity, metal ion binding
18. 3pt1A [pdb]
LRMSD: 1.49p-value: 0.000807
Matching residues: ARG135 LYS296 HIS303 ASP325 ALA328 SER336
Cellular Component: nucleus, cytoplasm
19. 3n0lB [pdb]
LRMSD: 1.51p-value: 0.000867
Matching residues: ALA169 ALA173 LYS224 ASP308 HIS310 ARG365
EC class: 2.1.2.1
Biological process: glycine metabolic process, L-serine metabolic process, one-carbon metabolic process
Cellular Component: cytoplasm
Molecular function: catalytic activity, glycine hydroxymethyltransferase activity, protein binding, transferase activity, pyridoxal phosphate binding
20. 3ou5A [pdb]
LRMSD: 1.52p-value: 0.000934
Matching residues: THR209 ALA213 LYS264 ASP362 HIS364 ARG418
EC class: 2.1.2.1
Biological process: glycine metabolic process, L-serine metabolic process, one-carbon metabolic process
Cellular Component: mitochondrion, mitochondrial matrix, mitochondrial nucleoid
Molecular function: catalytic activity, glycine hydroxymethyltransferase activity, protein binding, methyltransferase activity, transferase activity, pyridoxal phosphate binding
