The LabelHash Server
1ggmA motif
Motif residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 1b76B [pdb]
LRMSD: 0.225p-value: 1.68e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
Biological process: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation
Cellular Component: cytoplasm
Molecular function: nucleotide binding, aminoacyl-tRNA ligase activity, glycine-tRNA ligase activity, ATP binding, ligase activity, protein dimerization activity
2. 1atiB [pdb]
LRMSD: 0.385p-value: 5.41e-05
Matching residues: GLU188 GLU239 GLU241 ARG311 GLU359 SER361
EC class: 6.1.1.14
Biological process: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation
Cellular Component: cytoplasm
Molecular function: nucleotide binding, aminoacyl-tRNA ligase activity, glycine-tRNA ligase activity, ATP binding, ligase activity, protein dimerization activity
3. 2q5iA [pdb]
LRMSD: 0.846p-value: 0.000114
Matching residues: GLU245 GLU296 GLU298 ARG410 GLU522 SER524
EC class: 6.1.1.14
Biological process: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation, cell death, diadenosine tetraphosphate biosynthetic process, regulated secretory pathway
Cellular Component: soluble fraction, cytoplasm, mitochondrion, mitochondrial matrix, cytosol, stored secretory granule
Molecular function: nucleotide binding, aminoacyl-tRNA ligase activity, glycine-tRNA ligase activity, protein binding, ATP binding, ligase activity, protein dimerization activity
4. 3d6jA [pdb]
LRMSD: 0.865p-value: 0.000124
Matching residues: THR23 LEU50 GLU72 SER74 GLU76 ALA77
EC class: 0.0.0.0
Biological process: metabolic process
Molecular function: catalytic activity, phosphoglycolate phosphatase activity, hydrolase activity
5. 2p62B [pdb]
LRMSD: 0.891p-value: 0.000143
Matching residues: THR12 GLU14 SER15 LEU20 GLU153 SER205
EC class: 0.0.0.0
6. 3iaeB [pdb]
LRMSD: 1.02p-value: 0.000251
Matching residues: LEU211 GLU214 SER216 THR218 ALA219 GLU327
EC class: 0.0.0.0
Molecular function: magnesium ion binding, catalytic activity, lyase activity, thiamine pyrophosphate binding
7. 2px8A [pdb]
LRMSD: 1.04p-value: 0.000292
Matching residues: GLU10 SER153 GLU155 GLU157 GLU158 LEU184
EC class: 3.4.21.91, 2.7.7.48
Biological process: transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle, viral genome replication, evasion by virus of host immune response, methylation
Cellular Component: membrane, integral to membrane, virion, viral nucleocapsid, viral capsid, viral envelope, host cell membrane, virion part
Molecular function: nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, mRNA (guanine-N7-)-methyltransferase activity, mRNA (nucleoside-2'-O-)-methyltransferase activity, structural molecule activity, ATP binding, methyltransferase activity, transferase activity, nucleotidyltransferase activity, hydrolase activity, nucleoside-triphosphatase activity
8. 2oy0B [pdb]
LRMSD: 1.05p-value: 0.000292
Matching residues: GLU10 SER153 GLU155 GLU157 GLU158 LEU184
EC class: 3.4.21.91, 2.7.7.48
Biological process: transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle, viral genome replication, evasion by virus of host immune response, methylation, interspecies interaction between organisms, transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle
Cellular Component: membrane, integral to membrane, virion, viral nucleocapsid, viral capsid, viral envelope, host cell membrane, virion part, membrane, integral to membrane, virion, viral capsid, viral envelope, host cell membrane, virion part
Molecular function: nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, mRNA (guanine-N7-)-methyltransferase activity, mRNA (nucleoside-2'-O-)-methyltransferase activity, structural molecule activity, ATP binding, methyltransferase activity, transferase activity, nucleotidyltransferase activity, hydrolase activity, nucleoside-triphosphatase activity, nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, structural molecule activity, ATP binding, methyltransferase activity, hydrolase activity
9. 2ovwD [pdb]
LRMSD: 1.05p-value: 0.000304
Matching residues: THR15 LEU122 GLU126 SER128 GLU393 THR397
EC class: 3.2.1.4
Biological process: polysaccharide catabolic process, carbohydrate metabolic process, metabolic process, cellulose catabolic process
Molecular function: hydrolase activity, hydrolyzing O-glycosyl compounds, cellulase activity, hydrolase activity
10. 3p8zA [pdb]
LRMSD: 1.05p-value: 0.000317
Matching residues: GLU11 SER153 THR155 GLU157 GLU158 LEU182
EC class: 0.0.0.0
Biological process: transcription, RNA-dependent, viral reproduction, RNA metabolic process, viral infectious cycle, viral genome replication
Cellular Component: membrane, integral to membrane, virion, viral capsid, viral envelope, host cell membrane, virion part
Molecular function: nucleotide binding, nucleic acid binding, RNA binding, RNA helicase activity, double-stranded RNA binding, catalytic activity, RNA-directed RNA polymerase activity, serine-type endopeptidase activity, helicase activity, structural molecule activity, ATP binding, methyltransferase activity, hydrolase activity
11. 2zwiB [pdb]
LRMSD: 1.09p-value: 0.000376
Matching residues: ARG161 GLU164 GLU166 GLU168 GLU193 SER222
EC class: 0.0.0.0
Molecular function: transferase activity, transferase activity
12. 1avhA [pdb]
LRMSD: 1.1p-value: 0.00043
Matching residues: ALA27 THR33 GLU36 SER37 LEU42 GLU72
EC class: 0.0.0.0
Biological process: anti-apoptosis, signal transduction, blood coagulation, response to organic substance, negative regulation of coagulation, protein homooligomerization
Cellular Component: intracellular, cytoplasm
Molecular function: phospholipase inhibitor activity, calcium ion binding, protein binding, phospholipid binding, calcium-dependent phospholipid binding, receptor tyrosine kinase binding, eukaryotic cell surface binding
13. 1ipkB [pdb]
LRMSD: 1.16p-value: 0.000621
Matching residues: THR160 SER164 GLU165 GLU167 GLU168 LEU173
EC class: 0.0.0.0
Cellular Component: vacuole, aleurone grain
Molecular function: nutrient reservoir activity
14. 3eucA [pdb]
LRMSD: 1.16p-value: 0.000621
Matching residues: GLU284 SER348 THR349 GLU351 GLU352 LEU357
EC class: 2.6.1.9
Biological process: histidine biosynthetic process, cellular amino acid biosynthetic process, biosynthetic process
Molecular function: catalytic activity, histidinol-phosphate transaminase activity, transaminase activity, transferase activity, transferase activity, transferring nitrogenous groups
15. 3dc8B [pdb]
LRMSD: 1.17p-value: 0.000651
Matching residues: GLU73 ARG77 SER110 THR111 GLU444 GLU448
EC class: 0.0.0.0
Molecular function: hydrolase activity, hydrolase activity
16. 2zzeA [pdb]
LRMSD: 1.17p-value: 0.000651
Matching residues: LEU627 SER654 GLU655 GLU657 GLU660 THR736
EC class: 6.1.1.7
Biological process: translation, alanyl-tRNA aminoacylation, tRNA aminoacylation
Cellular Component: cytoplasm
Molecular function: tRNA binding, nucleotide binding, aminoacyl-tRNA editing activity, nucleic acid binding, RNA binding, aminoacyl-tRNA ligase activity, alanine-tRNA ligase activity, ATP binding, ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds
17. 1f6tB [pdb]
LRMSD: 1.17p-value: 0.000651
Matching residues: GLU9 LEU13 SER124 SER126 GLU128 GLU133
EC class: 2.7.4.6
Biological process: GTP biosynthetic process, dGDP phosphorylation, dGTP biosynthetic process from dGDP, UTP biosynthetic process, CTP biosynthetic process, translational elongation, cytoskeleton organization, G-protein coupled receptor protein signaling pathway, nucleotide metabolic process, nucleoside triphosphate biosynthetic process, response to bacterium
Cellular Component: cytoplasm, ribosome, cytoskeleton, plasma membrane, stored secretory granule, phagocytic vesicle
Molecular function: nucleotide binding, nucleoside diphosphate kinase activity, ATP binding, kinase activity, transferase activity, metal ion binding
18. 3p40A [pdb]
LRMSD: 1.17p-value: 0.000651
Matching residues: SER254 GLU267 GLU313 THR328 SER330 ARG332
Biological process: cell adhesion, axon guidance, peripheral nervous system development, myelination, synapse organization
Cellular Component: plasma membrane, membrane, integral to membrane, axon, node of Ranvier
Molecular function: protein binding
19. 3dojA [pdb]
LRMSD: 1.18p-value: 0.000683
Matching residues: ARG31 GLU48 SER49 ALA51 GLU52 THR60
EC class: 0.0.0.0
Biological process: pentose-phosphate shunt, valine metabolic process, response to oxidative stress, metabolic process, oxidation-reduction process
Cellular Component: cytosol
Molecular function: catalytic activity, 3-hydroxybutyrate dehydrogenase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, 3-hydroxyisobutyrate dehydrogenase activity, oxidoreductase activity, coenzyme binding
20. 3gufB [pdb]
LRMSD: 1.18p-value: 0.000717
Matching residues: SER86 GLU87 SER89 THR90 GLU93 ARG100
Biological process: response to stress
