The LabelHash Server
2ahjA motif
Motif residues: PRO53 LEU120 TYR127 VAL190 ASP193 ILE196
Table of Top 100 matches
Click here for a compact table with the top 100 matches.The images below show the motif residues and the match residues superimposed. The carbon atoms are white in the motif and green in the match. Other atoms in the motif and match are colored by element. The C-alphas are shown as spheres, while the remaining motif and match atoms are shown in stick representation. The rest of the matching protein is shown in ribbon representation.
Downloads
- A zip file with PDB files for the top 100 matches and the motif itself.
- An XML file with all matches. You can open this file in Chimera with our ViewMatch plugin.
Top 20 matches
For each match you can click on the "[pdb]" link to download a PDB file with the matching chain aligned with the motif.1. 2zpiA [pdb]
LRMSD: 0.0811p-value: 1.9e-05
Matching residues: PRO53 LEU120 TYR127 VAL190 ASP193 ILE196
EC class: 4.2.1.84
Biological process: nitrogen compound metabolic process, nitrogen compound metabolic process, photosynthesis
Cellular Component: plastid
Molecular function: catalytic activity, lyase activity, nitrile hydratase activity, metal ion binding, transition metal ion binding, catalytic activity, lyase activity, nitrile hydratase activity, transition metal ion binding
2. 3qygC [pdb]
LRMSD: 0.454p-value: 8.31e-05
Matching residues: PRO56 LEU123 TYR130 VAL193 ASP196 ILE199
3. 1v29A [pdb]
LRMSD: 0.497p-value: 0.000109
Matching residues: PRO64 LEU131 TYR138 VAL201 ASP204 ILE207
EC class: 0.0.0.0
Biological process: nitrogen compound metabolic process
Molecular function: catalytic activity, nitrile hydratase activity, transition metal ion binding
4. 3hhtA [pdb]
LRMSD: 0.533p-value: 0.000133
Matching residues: PRO60 LEU127 TYR134 VAL197 ASP200 ILE203
EC class: 0.0.0.0
Biological process: nitrogen compound metabolic process, nitrogen compound metabolic process, photosynthesis
Cellular Component: plastid
Molecular function: catalytic activity, nitrile hydratase activity, transition metal ion binding, catalytic activity, nitrile hydratase activity, transition metal ion binding
5. 2dxcI [pdb]
LRMSD: 0.541p-value: 0.000138
Matching residues: PRO61 LEU139 TYR146 VAL209 ASP212 ILE215
EC class: 3.5.5.8
Biological process: nitrogen compound metabolic process, photosynthesis, photosynthesis
Cellular Component: plastid, plastid
Molecular function: catalytic activity, hydrolase activity, thiocyanate hydrolase activity, metal ion binding, transition metal ion binding, catalytic activity, hydrolase activity, thiocyanate hydrolase activity, catalytic activity, hydrolase activity, thiocyanate hydrolase activity
6. 1gpmA [pdb]
LRMSD: 1.28p-value: 0.000233
Matching residues: TYR33 ILE213 ASP216 VAL218 PRO375 LEU376
EC class: 6.3.5.2
Biological process: purine nucleotide biosynthetic process, GMP biosynthetic process, glutamine metabolic process, biosynthetic process
Cellular Component: cytosol
Molecular function: nucleotide binding, catalytic activity, GMP synthase activity, GMP synthase (glutamine-hydrolyzing) activity, protein binding, ATP binding, ligase activity
7. 2rdsA [pdb]
LRMSD: 1.38p-value: 0.000287
Matching residues: TYR87 ILE116 PRO155 LEU156 VAL166 ASP244
EC class: 0.0.0.0
8. 3i2vA [pdb]
LRMSD: 1.4p-value: 0.000305
Matching residues: ASP21 VAL28 PRO40 LEU41 TYR75 ILE77
EC class: 0.0.0.0
Biological process: tRNA wobble uridine modification, Mo-molybdopterin cofactor biosynthetic process, tRNA processing, metabolic process, enzyme active site formation via L-cysteine persulfide, tRNA thio-modification
Cellular Component: cytoplasm, cytosol
Molecular function: nucleotide binding, catalytic activity, thiosulfate sulfurtransferase activity, binding, protein binding, ATP binding, transferase activity, nucleotidyltransferase activity, sulfurtransferase activity, URM1 activating enzyme activity, metal ion binding
9. 2uvbC [pdb]
LRMSD: 1.49p-value: 0.000408
Matching residues: PRO794 TYR829 LEU837 ILE839 VAL889 ASP895
10. 3ke5B [pdb]
LRMSD: 1.49p-value: 0.000419
Matching residues: PRO105 LEU106 ILE110 VAL165 ASP174 TYR177
EC class: 0.0.0.0
Biological process: cobalamin biosynthetic process
Molecular function: ATP binding, cob(I)yrinic acid a,c-diamide adenosyltransferase activity
11. 2tmkB [pdb]
LRMSD: 1.53p-value: 0.000485
Matching residues: ILE10 TYR26 ASP93 VAL96 PRO126 LEU128
EC class: 2.7.4.9
Biological process: dUDP biosynthetic process, dTDP biosynthetic process, dTTP biosynthetic process, nucleotide biosynthetic process
Cellular Component: nucleus, cytoplasm
Molecular function: nucleotide binding, thymidylate kinase activity, protein binding, ATP binding, uridylate kinase activity, kinase activity, transferase activity, identical protein binding
12. 3bv0A [pdb]
LRMSD: 1.53p-value: 0.000501
Matching residues: ASP242 ILE243 TYR247 LEU251 VAL274 PRO276
EC class: 2.6.1.62
Biological process: biotin biosynthetic process, protein homotetramerization
Cellular Component: cytoplasm
Molecular function: catalytic activity, adenosylmethionine-8-amino-7-oxononanoate transaminase activity, transaminase activity, transferase activity, pyridoxal phosphate binding
13. 2ah6B [pdb]
LRMSD: 1.55p-value: 0.000517
Matching residues: PRO106 LEU108 ILE112 VAL167 ASP176 TYR179
EC class: 0.0.0.0
Biological process: cobalamin biosynthetic process
Molecular function: ATP binding, cob(I)yrinic acid a,c-diamide adenosyltransferase activity
14. 2xznW [pdb]
LRMSD: 1.57p-value: 0.000586
Matching residues: LEU42 VAL74 PRO85 ASP90 ILE103 TYR105
EC class: 0.0.0.0
Biological process: translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation, translation
Cellular Component: intracellular, ribosome, intracellular, ribosome, small ribosomal subunit, ribonucleoprotein complex, intracellular, ribosome, ribonucleoprotein complex, intracellular, ribosome, small ribosomal subunit, intracellular, ribosome, ribonucleoprotein complex, intracellular, ribosome, small ribosomal subunit, intracellular, ribosome, intracellular, ribosome, intracellular, ribosome, small ribosomal subunit, ribonucleoprotein complex, intracellular, ribosome, small ribosomal subunit, ribonucleoprotein complex, intracellular, ribosome, intracellular, ribosome, intracellular, cytoplasm, ribosome, ribonucleoprotein complex, intracellular, ribosome, small ribosomal subunit, ribonucleoprotein complex, intracellular, ribosome, intracellular, ribosome
Molecular function: structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome, RNA binding, structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome, RNA binding, structural constituent of ribosome, RNA binding, structural constituent of ribosome, rRNA binding, structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome, RNA binding, structural constituent of ribosome, structural constituent of ribosome, structural constituent of ribosome
15. 1rtyB [pdb]
LRMSD: 1.59p-value: 0.000645
Matching residues: PRO105 LEU107 ILE111 VAL166 ASP175 TYR178
EC class: 2.5.1.17
Biological process: porphyrin biosynthetic process, cobalamin biosynthetic process
Cellular Component: cytoplasm
Molecular function: nucleotide binding, ATP binding, cob(I)yrinic acid a,c-diamide adenosyltransferase activity, transferase activity
16. 3bs8A [pdb]
LRMSD: 1.6p-value: 0.000645
Matching residues: ASP228 ILE229 TYR233 LEU237 VAL259 PRO261
EC class: 5.4.3.8
Biological process: porphyrin biosynthetic process, tetrapyrrole biosynthetic process
Cellular Component: cytoplasm
Molecular function: catalytic activity, transaminase activity, isomerase activity, pyridoxal phosphate binding, glutamate-1-semialdehyde 2,1-aminomutase activity
17. 1ui7B [pdb]
LRMSD: 1.61p-value: 0.000666
Matching residues: VAL107 PRO136 LEU137 TYR144 ILE152 ASP180
EC class: 1.4.3.21
Biological process: amine metabolic process, oxidation-reduction process
Molecular function: copper ion binding, primary amine oxidase activity, oxidoreductase activity, metal ion binding, quinone binding
18. 3olmA [pdb]
LRMSD: 1.63p-value: 0.000759
Matching residues: TYR705 ASP712 ILE715 LEU783 PRO784 VAL787
Biological process: DNA repair, response to DNA damage stimulus, ribosomal large subunit export from nucleus, protein polyubiquitination, chromatin assembly or disassembly, rRNA processing, tRNA export from nucleus, protein modification process, ubiquitin-dependent protein catabolic process, protein monoubiquitination, regulation of nitrogen utilization, mitochondrion organization, tRNA processing, positive regulation of gene-specific transcription from RNA polymerase II promoter, regulation of mRNA export from nucleus, regulation of dolichol biosynthetic process, regulation of ubiquinone biosynthetic process, regulation of multivesicular body size, regulation of phosphate metabolic process, regulation of ergosterol biosynthetic process, late endosome to vacuole transport via multivesicular body sorting pathway, regulation of protein localization, regulation of actin cytoskeleton organization, ribophagy, cellular response to UV, response to drug, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, proteasomal ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway, positive regulation of fatty acid biosynthetic process, positive regulation of endocytosis, positive regulation of receptor-mediated endocytosis, ubiquitin-dependent endocytosis
Cellular Component: nucleus, cytoplasm, ubiquitin ligase complex, plasma membrane enriched fraction, intracellular, nucleus, cytoplasm, mitochondrion, Golgi apparatus, cellular bud tip, endosome membrane, extrinsic to internal side of plasma membrane
Molecular function: ubiquitin-protein ligase activity, protein binding, ligase activity, acid-amino acid ligase activity, phosphatidylinositol binding, identical protein binding, ubiquitin binding
19. 3nyyA [pdb]
LRMSD: 1.64p-value: 0.000811
Matching residues: VAL137 ASP156 ILE157 TYR202 PRO263 LEU265
EC class: 0.0.0.0
Biological process: proteolysis
Molecular function: metalloendopeptidase activity
20. 2nwuA [pdb]
LRMSD: 1.65p-value: 0.000838
Matching residues: ILE65 ASP67 TYR72 LEU126 PRO128 VAL134
EC class: 0.0.0.0
Biological process: translation
Cellular Component: intracellular, ribosome
Molecular function: structural constituent of ribosome
